IL_7TM3_092

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

AACAAUG*CUAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TM3_092 not in the Motif Atlas

Homologous match to IL_8C3A_080

Geometric discrepancy: 0.1095

The information below is about IL_8C3A_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49460.3

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

7TM3|1|K|A|2832
7TM3|1|K|A|2833
7TM3|1|K|C|2834
7TM3|1|K|A|2835
7TM3|1|K|A|2836
7TM3|1|K|U|2837
7TM3|1|K|G|2838
*
7TM3|1|K|C|3850
7TM3|1|K|U|3851
7TM3|1|K|A|3852
7TM3|1|K|U|3853

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain P

uL22

Chain d

eL31

Chain w

uL3