IL_7TM3_100

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

7TM3|1|K|A|3663, 7TM3|1|K|U|3679, 7TM3|1|K|C|3683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TM3_100 not in the Motif Atlas

Homologous match to IL_8C3A_088

Geometric discrepancy: 0.0853

The information below is about IL_8C3A_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

7TM3|1|K|C|3660
7TM3|1|K|G|3661
7TM3|1|K|A|3662
7TM3|1|K|A|3663
7TM3|1|K|G|3664
7TM3|1|K|G|3665
*
7TM3|1|K|U|3677
7TM3|1|K|G|3678
7TM3|1|K|U|3679
7TM3|1|K|U|3680
7TM3|1|K|G|3681
7TM3|1|K|A|3682
7TM3|1|K|C|3683
7TM3|1|K|G|3684

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein L8

Chain p

eL43