IL_7TM3_150

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

GUU*GUCAGC

Length

9 nucleotides

Bulged bases

7TM3|1|K|G|5049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TM3_150 not in the Motif Atlas

Homologous match to IL_8C3A_138

Geometric discrepancy: 0.1995

The information below is about IL_8C3A_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

7TM3|1|K|G|5000
7TM3|1|K|U|5001
7TM3|1|K|U|5002
*
7TM3|1|K|G|5045
7TM3|1|K|U|5046
7TM3|1|K|C|5047
7TM3|1|K|A|5048
7TM3|1|K|G|5049
7TM3|1|K|C|5050

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain W

60S ribosomal protein L24

Chain d

eL31

Chain w

uL3