IL_7TM3_174

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

AUUA*UUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TM3_174 not in the Motif Atlas

Homologous match to IL_8CRE_044

Geometric discrepancy: 0.089

The information below is about IL_8CRE_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

7TM3|1|K|A|1746
7TM3|1|K|U|1747
7TM3|1|K|U|1748
7TM3|1|K|A|1749
*
7TM3|1|K|U|1781
7TM3|1|K|U|1782
7TM3|1|K|C|1783
7TM3|1|K|U|1784

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain D

Ribosomal_L18_c domain-containing protein

Chain I

60S ribosomal protein L10

Chain u

5S ribosomal RNA; 5S rRNA