3D structure

PDB id
7TOO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
GUAGUAG*CGAAAC
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7TOO_060 not in the Motif Atlas
Homologous match to IL_8C3A_065
Geometric discrepancy: 0.0916
The information below is about IL_8C3A_065
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_76042.3
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
9

Unit IDs

7TOO|1|A25S|G|1444
7TOO|1|A25S|U|1445
7TOO|1|A25S|A|1446
7TOO|1|A25S|G|1447
7TOO|1|A25S|U|1448
7TOO|1|A25S|A|1449
7TOO|1|A25S|G|1450
*
7TOO|1|A25S|C|2354
7TOO|1|A25S|G|2355
7TOO|1|A25S|A|2356
7TOO|1|A25S|A|2357
7TOO|1|A25S|A|2358
7TOO|1|A25S|C|2359

Current chains

Chain A25S
25S rRNA

Nearby chains

Chain A58S
5.8S ribosomal RNA; 5.8S rRNA
Chain AGR
ALS-FTD-associated dipeptide repeat protein, GR20
Chain AL04
RPL4A isoform 1
Chain AL17
60S ribosomal protein L17-A

Coloring options:


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