IL_7TOO_072

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUAUCA*UCUUAUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOO_072 not in the Motif Atlas

Homologous match to IL_8C3A_078

Geometric discrepancy: 0.2121

The information below is about IL_8C3A_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_39753.2

Basepair signature

cWW-L-R-tWH-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

7TOO|1|A25S|U|1702
7TOO|1|A25S|U|1703
7TOO|1|A25S|A|1704
7TOO|1|A25S|U|1705
7TOO|1|A25S|C|1706
7TOO|1|A25S|A|1707
*
7TOO|1|A25S|U|1737
7TOO|1|A25S|C|1738
7TOO|1|A25S|U|1739
7TOO|1|A25S|U|1740
7TOO|1|A25S|A|1741
7TOO|1|A25S|U|1742
7TOO|1|A25S|G|1743

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL34

60S ribosomal protein L34-A