IL_7TOO_117

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UAAUU*ACCA

Length

9 nucleotides

Bulged bases

7TOO|1|A25S|C|3092

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOO_117 not in the Motif Atlas

Homologous match to IL_8C3A_126

Geometric discrepancy: 0.1351

The information below is about IL_8C3A_126

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

Major groove minor groove platform with tHH

Motif group

IL_14592.1

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

7TOO|1|A25S|U|3047
7TOO|1|A25S|A|3048
7TOO|1|A25S|A|3049
7TOO|1|A25S|U|3050
7TOO|1|A25S|U|3051
*
7TOO|1|A25S|A|3091
7TOO|1|A25S|C|3092
7TOO|1|A25S|C|3093
7TOO|1|A25S|A|3094

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL03

RPL3 isoform 1

Chain AL23

60S ribosomal protein L23-A

Chain AL24

RPL24A isoform 1