IL_7TOO_118

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUUUUG*CGAAG

Length

11 nucleotides

Bulged bases

7TOO|1|A25S|U|3056, 7TOO|1|A25S|U|3058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOO_118 not in the Motif Atlas

Homologous match to IL_8C3A_127

Geometric discrepancy: 0.1204

The information below is about IL_8C3A_127

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

7TOO|1|A25S|U|3054
7TOO|1|A25S|U|3055
7TOO|1|A25S|U|3056
7TOO|1|A25S|U|3057
7TOO|1|A25S|U|3058
7TOO|1|A25S|G|3059
*
7TOO|1|A25S|C|3084
7TOO|1|A25S|G|3085
7TOO|1|A25S|A|3086
7TOO|1|A25S|A|3087
7TOO|1|A25S|G|3088

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL03

RPL3 isoform 1

Chain AL24

RPL24A isoform 1

Chain AL31

60S ribosomal protein L31-A