IL_7TOP_020

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAAUGUAG*UAUUAUAGC

Length

17 nucleotides

Bulged bases

7TOP|1|A25S|U|534, 7TOP|1|A25S|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOP_020 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.1068

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7TOP|1|A25S|G|531
7TOP|1|A25S|A|532
7TOP|1|A25S|A|533
7TOP|1|A25S|U|534
7TOP|1|A25S|G|535
7TOP|1|A25S|U|536
7TOP|1|A25S|A|537
7TOP|1|A25S|G|538
*
7TOP|1|A25S|U|553
7TOP|1|A25S|A|554
7TOP|1|A25S|U|555
7TOP|1|A25S|U|556
7TOP|1|A25S|A|557
7TOP|1|A25S|U|558
7TOP|1|A25S|A|559
7TOP|1|A25S|G|560
7TOP|1|A25S|C|561

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL14

60S ribosomal protein L14-A

Chain AL20

60S ribosomal protein L20-A