IL_7TOP_028
3D structure
- PDB id
- 7TOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 7TOP|1|A25S|A|933, 7TOP|1|A25S|G|937
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOP_028 not in the Motif Atlas
- Geometric match to IL_5TBW_028
- Geometric discrepancy: 0.0837
- The information below is about IL_5TBW_028
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
7TOP|1|A25S|G|805
7TOP|1|A25S|A|806
7TOP|1|A25S|A|807
7TOP|1|A25S|A|808
7TOP|1|A25S|G|809
*
7TOP|1|A25S|C|931
7TOP|1|A25S|U|932
7TOP|1|A25S|A|933
7TOP|1|A25S|G|934
7TOP|1|A25S|U|935
7TOP|1|A25S|A|936
7TOP|1|A25S|G|937
7TOP|1|A25S|C|938
Current chains
- Chain A25S
- 25S rRNA
Nearby chains
- Chain AL04
- RPL4A isoform 1
- Chain AL13
- 60S ribosomal protein L13-A
- Chain AL15
- 60S ribosomal protein L15-A
- Chain AL28
- 60S ribosomal protein L28
- Chain AL37
- 60S ribosomal protein L37-A
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