IL_7TOP_043

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUUCCG*UGAC

Length

10 nucleotides

Bulged bases

7TOP|1|A25S|C|1016, 7TOP|1|A25S|C|1017

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOP_043 not in the Motif Atlas

Geometric match to IL_5TBW_043

Geometric discrepancy: 0.1975

The information below is about IL_5TBW_043

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_71110.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

10

Unit IDs

7TOP|1|A25S|G|1013
7TOP|1|A25S|U|1014
7TOP|1|A25S|U|1015
7TOP|1|A25S|C|1016
7TOP|1|A25S|C|1017
7TOP|1|A25S|G|1018
*
7TOP|1|A25S|U|1034
7TOP|1|A25S|G|1035
7TOP|1|A25S|A|1036
7TOP|1|A25S|C|1037

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL05

RPL5 isoform 1

Chain AL10

RPL10 isoform 1

Chain AL11

RPL11A isoform 1