IL_7TOP_051
3D structure
- PDB id
- 7TOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CUCAUCAG*CUCAAG
- Length
- 14 nucleotides
- Bulged bases
- 7TOP|1|A25S|U|1191, 7TOP|1|A25S|C|1192, 7TOP|1|A25S|C|1316, 7TOP|1|A25S|A|1318
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOP_051 not in the Motif Atlas
- Homologous match to IL_8C3A_054
- Geometric discrepancy: 0.0902
- The information below is about IL_8C3A_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_27086.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
7TOP|1|A25S|C|1187
7TOP|1|A25S|U|1188
7TOP|1|A25S|C|1189
7TOP|1|A25S|A|1190
7TOP|1|A25S|U|1191
7TOP|1|A25S|C|1192
7TOP|1|A25S|A|1193
7TOP|1|A25S|G|1194
*
7TOP|1|A25S|C|1314
7TOP|1|A25S|U|1315
7TOP|1|A25S|C|1316
7TOP|1|A25S|A|1317
7TOP|1|A25S|A|1318
7TOP|1|A25S|G|1319
Current chains
- Chain A25S
- 25S rRNA
Nearby chains
- Chain AL09
- 60S ribosomal protein L9-A
- Chain AL14
- 60S ribosomal protein L14-A
- Chain AL16
- 60S ribosomal protein L16-A
- Chain AL20
- 60S ribosomal protein L20-A
- Chain AL40
- Ubiquitin-60S ribosomal protein L40
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