3D structure

PDB id
7TOP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
UCUAGACAG*CCGAA
Length
14 nucleotides
Bulged bases
7TOP|1|A25S|U|1220, 7TOP|1|A25S|A|1221
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7TOP_054 not in the Motif Atlas
Homologous match to IL_8C3A_057
Geometric discrepancy: 0.4222
The information below is about IL_8C3A_057
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_90538.5
Basepair signature
cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L
Number of instances in this motif group
6

Unit IDs

7TOP|1|A25S|U|1218
7TOP|1|A25S|C|1219
7TOP|1|A25S|U|1220
7TOP|1|A25S|A|1221
7TOP|1|A25S|G|1222
7TOP|1|A25S|A|1223
7TOP|1|A25S|C|1224
7TOP|1|A25S|A|1225
7TOP|1|A25S|G|1226
*
7TOP|1|A25S|C|1283
7TOP|1|A25S|C|1284
7TOP|1|A25S|G|1285
7TOP|1|A25S|A|1286
7TOP|1|A25S|A|1287

Current chains

Chain A25S
25S rRNA

Nearby chains

Chain AL20
60S ribosomal protein L20-A
Chain ALP0
60S acidic ribosomal protein P0

Coloring options:


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