IL_7TOP_061
3D structure
- PDB id
- 7TOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GUAGUAG*CGAAAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOP_061 not in the Motif Atlas
- Homologous match to IL_8C3A_065
- Geometric discrepancy: 0.0847
- The information below is about IL_8C3A_065
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_76042.3
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
7TOP|1|A25S|G|1444
7TOP|1|A25S|U|1445
7TOP|1|A25S|A|1446
7TOP|1|A25S|G|1447
7TOP|1|A25S|U|1448
7TOP|1|A25S|A|1449
7TOP|1|A25S|G|1450
*
7TOP|1|A25S|C|2354
7TOP|1|A25S|G|2355
7TOP|1|A25S|A|2356
7TOP|1|A25S|A|2357
7TOP|1|A25S|A|2358
7TOP|1|A25S|C|2359
Current chains
- Chain A25S
- 25S rRNA
Nearby chains
- Chain A58S
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AL04
- RPL4A isoform 1
- Chain AL17
- 60S ribosomal protein L17-A
- Chain PR
- PR20
Coloring options: