IL_7TOP_082

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGAUGG*UGUUGACG

Length

14 nucleotides

Bulged bases

7TOP|1|A25S|U|2159, 7TOP|1|A25S|U|2175, 7TOP|1|A25S|C|2179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOP_082 not in the Motif Atlas

Homologous match to IL_8C3A_088

Geometric discrepancy: 0.0932

The information below is about IL_8C3A_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

7TOP|1|A25S|C|2156
7TOP|1|A25S|G|2157
7TOP|1|A25S|A|2158
7TOP|1|A25S|U|2159
7TOP|1|A25S|G|2160
7TOP|1|A25S|G|2161
*
7TOP|1|A25S|U|2173
7TOP|1|A25S|G|2174
7TOP|1|A25S|U|2175
7TOP|1|A25S|U|2176
7TOP|1|A25S|G|2177
7TOP|1|A25S|A|2178
7TOP|1|A25S|C|2179
7TOP|1|A25S|G|2180

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL02

60S ribosomal protein L2-A

Chain AL43

60S ribosomal protein L43-A