IL_7TOP_097

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAU*AGUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOP_097 not in the Motif Atlas

Geometric match to IL_5TBW_099

Geometric discrepancy: 0.1061

The information below is about IL_5TBW_099

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_71241.2

Basepair signature

cWW-cWW-tSH-cWW-L-L

Number of instances in this motif group

7

Unit IDs

7TOP|1|A25S|C|2666
7TOP|1|A25S|A|2667
7TOP|1|A25S|U|2668
*
7TOP|1|A25S|A|2686
7TOP|1|A25S|G|2687
7TOP|1|A25S|U|2688
7TOP|1|A25S|A|2689
7TOP|1|A25S|G|2690

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain A5S

5S ribosomal RNA; 5S rRNA

Chain AL05

RPL5 isoform 1

Chain AL11

RPL11A isoform 1

Chain AL21

60S ribosomal protein L21-A