IL_7TOP_112

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

7TOP|1|A25S|A|3142, 7TOP|1|A25S|C|3143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOP_112 not in the Motif Atlas

Homologous match to IL_8C3A_123

Geometric discrepancy: 0.0993

The information below is about IL_8C3A_123

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7TOP|1|A25S|C|3004
7TOP|1|A25S|A|3005
7TOP|1|A25S|A|3006
7TOP|1|A25S|U|3007
*
7TOP|1|A25S|A|3139
7TOP|1|A25S|G|3140
7TOP|1|A25S|A|3141
7TOP|1|A25S|A|3142
7TOP|1|A25S|C|3143
7TOP|1|A25S|G|3144

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL03

RPL3 isoform 1

Chain AL16

60S ribosomal protein L16-A