3D structure

PDB id
7TOP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CUUAGUAC*GGAACAG
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7TOP_114 not in the Motif Atlas
Homologous match to IL_8C3A_125
Geometric discrepancy: 0.1018
The information below is about IL_8C3A_125
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.8
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

7TOP|1|A25S|C|3018
7TOP|1|A25S|U|3019
7TOP|1|A25S|U|3020
7TOP|1|A25S|A|3021
7TOP|1|A25S|G|3022
7TOP|1|A25S|U|3023
7TOP|1|A25S|A|3024
7TOP|1|A25S|C|3025
*
7TOP|1|A25S|G|3030
7TOP|1|A25S|G|3031
7TOP|1|A25S|A|3032
7TOP|1|A25S|A|3033
7TOP|1|A25S|C|3034
7TOP|1|A25S|A|3035
7TOP|1|A25S|G|3036

Current chains

Chain A25S
25S rRNA

Nearby chains

Chain AL03
RPL3 isoform 1
Chain AL09
60S ribosomal protein L9-A
Chain AL23
60S ribosomal protein L23-A
Chain AL40
Ubiquitin-60S ribosomal protein L40

Coloring options:


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