IL_7TOP_114
3D structure
- PDB id
- 7TOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CUUAGUAC*GGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOP_114 not in the Motif Atlas
- Homologous match to IL_8C3A_125
- Geometric discrepancy: 0.1018
- The information below is about IL_8C3A_125
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
7TOP|1|A25S|C|3018
7TOP|1|A25S|U|3019
7TOP|1|A25S|U|3020
7TOP|1|A25S|A|3021
7TOP|1|A25S|G|3022
7TOP|1|A25S|U|3023
7TOP|1|A25S|A|3024
7TOP|1|A25S|C|3025
*
7TOP|1|A25S|G|3030
7TOP|1|A25S|G|3031
7TOP|1|A25S|A|3032
7TOP|1|A25S|A|3033
7TOP|1|A25S|C|3034
7TOP|1|A25S|A|3035
7TOP|1|A25S|G|3036
Current chains
- Chain A25S
- 25S rRNA
Nearby chains
- Chain AL03
- RPL3 isoform 1
- Chain AL09
- 60S ribosomal protein L9-A
- Chain AL23
- 60S ribosomal protein L23-A
- Chain AL40
- Ubiquitin-60S ribosomal protein L40
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