3D structure

PDB id
7TOP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
UAAUU*ACCA
Length
9 nucleotides
Bulged bases
7TOP|1|A25S|C|3092
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7TOP_115 not in the Motif Atlas
Homologous match to IL_8C3A_126
Geometric discrepancy: 0.1275
The information below is about IL_8C3A_126
Detailed Annotation
Major groove minor groove platform with tHH
Broad Annotation
Major groove minor groove platform with tHH
Motif group
IL_14592.1
Basepair signature
cWW-tHH-cWW-L-L
Number of instances in this motif group
4

Unit IDs

7TOP|1|A25S|U|3047
7TOP|1|A25S|A|3048
7TOP|1|A25S|A|3049
7TOP|1|A25S|U|3050
7TOP|1|A25S|U|3051
*
7TOP|1|A25S|A|3091
7TOP|1|A25S|C|3092
7TOP|1|A25S|C|3093
7TOP|1|A25S|A|3094

Current chains

Chain A25S
25S rRNA

Nearby chains

Chain AL03
RPL3 isoform 1
Chain AL23
60S ribosomal protein L23-A
Chain AL24
RPL24A isoform 1

Coloring options:


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