IL_7TOP_115
3D structure
- PDB id
- 7TOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UAAUU*ACCA
- Length
- 9 nucleotides
- Bulged bases
- 7TOP|1|A25S|C|3092
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOP_115 not in the Motif Atlas
- Homologous match to IL_8C3A_126
- Geometric discrepancy: 0.1275
- The information below is about IL_8C3A_126
- Detailed Annotation
- Major groove minor groove platform with tHH
- Broad Annotation
- Major groove minor groove platform with tHH
- Motif group
- IL_14592.1
- Basepair signature
- cWW-tHH-cWW-L-L
- Number of instances in this motif group
- 4
Unit IDs
7TOP|1|A25S|U|3047
7TOP|1|A25S|A|3048
7TOP|1|A25S|A|3049
7TOP|1|A25S|U|3050
7TOP|1|A25S|U|3051
*
7TOP|1|A25S|A|3091
7TOP|1|A25S|C|3092
7TOP|1|A25S|C|3093
7TOP|1|A25S|A|3094
Current chains
- Chain A25S
- 25S rRNA
Nearby chains
- Chain AL03
- RPL3 isoform 1
- Chain AL23
- 60S ribosomal protein L23-A
- Chain AL24
- RPL24A isoform 1
Coloring options: