3D structure

PDB id
7TOP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
UUUUUG*CGAAG
Length
11 nucleotides
Bulged bases
7TOP|1|A25S|U|3056, 7TOP|1|A25S|U|3058
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7TOP_116 not in the Motif Atlas
Homologous match to IL_8C3A_127
Geometric discrepancy: 0.1045
The information below is about IL_8C3A_127
Detailed Annotation
UAA/GAN related
Broad Annotation
UAA/GAN related
Motif group
IL_17136.4
Basepair signature
cWW-R-L-tHS-tHW-cWW
Number of instances in this motif group
18

Unit IDs

7TOP|1|A25S|U|3054
7TOP|1|A25S|U|3055
7TOP|1|A25S|U|3056
7TOP|1|A25S|U|3057
7TOP|1|A25S|U|3058
7TOP|1|A25S|G|3059
*
7TOP|1|A25S|C|3084
7TOP|1|A25S|G|3085
7TOP|1|A25S|A|3086
7TOP|1|A25S|A|3087
7TOP|1|A25S|G|3088

Current chains

Chain A25S
25S rRNA

Nearby chains

Chain AL03
RPL3 isoform 1
Chain AL24
RPL24A isoform 1
Chain AL31
60S ribosomal protein L31-A

Coloring options:


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