IL_7TOQ_012
3D structure
- PDB id
- 7TOQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 7TOQ|1|A18S|U|172
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOQ_012 not in the Motif Atlas
- Geometric match to IL_4V88_394
- Geometric discrepancy: 0.2126
- The information below is about IL_4V88_394
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.3
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
7TOQ|1|A18S|G|145
7TOQ|1|A18S|G|146
7TOQ|1|A18S|A|147
7TOQ|1|A18S|U|148
7TOQ|1|A18S|A|149
7TOQ|1|A18S|A|150
7TOQ|1|A18S|C|151
*
7TOQ|1|A18S|G|167
7TOQ|1|A18S|C|168
7TOQ|1|A18S|U|169
7TOQ|1|A18S|A|170
7TOQ|1|A18S|A|171
7TOQ|1|A18S|U|172
7TOQ|1|A18S|A|173
7TOQ|1|A18S|C|174
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain AS06
- 40S ribosomal protein S6
- Chain AS24
- 40S ribosomal protein S24
Coloring options: