IL_7TOQ_039
3D structure
- PDB id
- 7TOQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAAAAAUU*ACCGCAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOQ_039 not in the Motif Atlas
- Geometric match to IL_4V88_425
- Geometric discrepancy: 0.3305
- The information below is about IL_4V88_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53064.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
7TOQ|1|A18S|G|807
7TOQ|1|A18S|A|808
7TOQ|1|A18S|A|809
7TOQ|1|A18S|A|810
7TOQ|1|A18S|A|811
7TOQ|1|A18S|A|812
7TOQ|1|A18S|A|813
7TOQ|1|A18S|U|814
7TOQ|1|A18S|U|815
*
7TOQ|1|A18S|A|849
7TOQ|1|A18S|C|850
7TOQ|1|A18S|C|851
7TOQ|1|A18S|G|852
7TOQ|1|A18S|C|853
7TOQ|1|A18S|A|854
7TOQ|1|A18S|G|855
7TOQ|1|A18S|C|856
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain AS04
- 40S ribosomal protein S4
- Chain AS09
- 40S ribosomal protein S9
- Chain AS11
- 40S ribosomal protein S11
- Chain AS22
- 40S ribosomal protein S15a
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