IL_7TOQ_041

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCGC*GAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOQ_041 not in the Motif Atlas

Geometric match to IL_4V88_438

Geometric discrepancy: 0.2154

The information below is about IL_4V88_438

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7TOQ|1|A18S|C|876
7TOQ|1|A18S|C|877
7TOQ|1|A18S|G|878
7TOQ|1|A18S|C|879
*
7TOQ|1|A18S|G|907
7TOQ|1|A18S|A|908
7TOQ|1|A18S|G|909
7TOQ|1|A18S|G|910

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AL19

60S ribosomal protein L19

Chain AS07

eS7