IL_7TOQ_044

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGCC*GAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOQ_044 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.271

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

7TOQ|1|A18S|C|927
7TOQ|1|A18S|G|928
7TOQ|1|A18S|G|929
7TOQ|1|A18S|C|930
7TOQ|1|A18S|C|931
*
7TOQ|1|A18S|G|1010
7TOQ|1|A18S|A|1011
7TOQ|1|A18S|A|1012
7TOQ|1|A18S|U|1013
7TOQ|1|A18S|G|1014

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS01

40S ribosomal protein S3a

Chain AS13

40S ribosomal protein S13

Chain AS27

40S ribosomal protein S27