IL_7TOQ_071

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACUA*UUCU

Length

8 nucleotides

Bulged bases

7TOQ|1|A18S|C|1403, 7TOQ|1|A18S|U|1404

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOQ_071 not in the Motif Atlas

Geometric match to IL_4V88_456

Geometric discrepancy: 0.266

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

7TOQ|1|A18S|A|1402
7TOQ|1|A18S|C|1403
7TOQ|1|A18S|U|1404
7TOQ|1|A18S|A|1405
*
7TOQ|1|A18S|U|1441
7TOQ|1|A18S|U|1442
7TOQ|1|A18S|C|1443
7TOQ|1|A18S|U|1444

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain ARAC

Receptor of activated protein C kinase 1

Chain AS16

uS9

Chain AS20

40S ribosomal protein S20