IL_7TOQ_078
3D structure
- PDB id
- 7TOQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCCC*GUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOQ_078 not in the Motif Atlas
- Geometric match to IL_4V88_464
- Geometric discrepancy: 0.156
- The information below is about IL_4V88_464
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65718.1
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7TOQ|1|A18S|G|1702
7TOQ|1|A18S|C|1703
7TOQ|1|A18S|C|1704
7TOQ|1|A18S|C|1705
*
7TOQ|1|A18S|G|1829
7TOQ|1|A18S|U|1830
7TOQ|1|A18S|A|1831
7TOQ|1|A18S|A|1832
7TOQ|1|A18S|C|1833
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain A25S
- Large subunit ribosomal RNA; LSU rRNA
- Chain AL41
- eL41
- Chain MRNA
- RNA (5'-R(*CP*AP*CP*AP*UP*GP*UP*UP*CP*C)-3')
- Chain PTRN
- Transfer RNA; tRNA
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