IL_7TOQ_080
3D structure
- PDB id
- 7TOQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOQ_080 not in the Motif Atlas
- Homologous match to IL_8CRE_469
- Geometric discrepancy: 0.4674
- The information below is about IL_8CRE_469
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_73099.1
- Basepair signature
- cWW-cHW-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
7TOQ|1|A18S|C|1708
7TOQ|1|A18S|G|1709
7TOQ|1|A18S|C|1710
7TOQ|1|A18S|U|1711
*
7TOQ|1|A18S|A|1822
7TOQ|1|A18S|A|1823
7TOQ|1|A18S|A|1824
7TOQ|1|A18S|A|1825
7TOQ|1|A18S|G|1826
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain A25S
- Large subunit ribosomal RNA; LSU rRNA
- Chain AL41
- eL41
- Chain AS23
- 40S ribosomal protein S23
- Chain MRNA
- RNA (5'-R(*CP*AP*CP*AP*UP*GP*UP*UP*CP*C)-3')
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