IL_7TOQ_086

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOQ_086 not in the Motif Atlas

Geometric match to IL_7RQB_075

Geometric discrepancy: 0.1569

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

7TOQ|1|A18S|C|1742
7TOQ|1|A18S|G|1743
7TOQ|1|A18S|G|1744
7TOQ|1|A18S|A|1745
7TOQ|1|A18S|U|1746
*
7TOQ|1|A18S|A|1788
7TOQ|1|A18S|G|1789
7TOQ|1|A18S|A|1790
7TOQ|1|A18S|A|1791
7TOQ|1|A18S|G|1792

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS06

40S ribosomal protein S6

Chain AS08

40S ribosomal protein S8