IL_7TOQ_091

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOQ_091 not in the Motif Atlas

Geometric match to IL_3ICQ_003

Geometric discrepancy: 0.1683

The information below is about IL_3ICQ_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

7TOQ|1|A25S|G|16
7TOQ|1|A25S|A|17
7TOQ|1|A25S|C|18
*
7TOQ|1|A58S|G|139
7TOQ|1|A58S|C|140
7TOQ|1|A58S|C|141

Current chains

Chain A25S

28S rRNA

Chain A58S

5.8S rRNA

Nearby chains

Chain AL15

60S ribosomal protein L15

Chain AL25

uL23

Chain AL35

60S ribosomal protein L35