IL_7TOQ_110

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAG*CACC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOQ_110 not in the Motif Atlas

Geometric match to IL_5J7L_283

Geometric discrepancy: 0.2694

The information below is about IL_5J7L_283

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7TOQ|1|A25S|G|461
7TOQ|1|A25S|G|462
7TOQ|1|A25S|A|463
7TOQ|1|A25S|G|464
*
7TOQ|1|A25S|C|691
7TOQ|1|A25S|A|692
7TOQ|1|A25S|C|693
7TOQ|1|A25S|C|694

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain AL06

60S ribosomal protein L6

Chain EL28

60S ribosomal protein L28