IL_7TOQ_118

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCCGG*UC

Length

8 nucleotides

Bulged bases

7TOQ|1|A25S|C|503

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOQ_118 not in the Motif Atlas

Geometric match to IL_5J7L_249

Geometric discrepancy: 0.2709

The information below is about IL_5J7L_249

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

7TOQ|1|A25S|G|500
7TOQ|1|A25S|C|501
7TOQ|1|A25S|C|502
7TOQ|1|A25S|C|503
7TOQ|1|A25S|G|504
7TOQ|1|A25S|G|505
*
7TOQ|1|A25S|U|653
7TOQ|1|A25S|C|654

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain AL04

60S ribosomal protein L4

Chain AL18

eL18