IL_7TOQ_137

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAUC*GCGCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOQ_137 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.344

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7TOQ|1|A25S|G|1425
7TOQ|1|A25S|G|1426
7TOQ|1|A25S|A|1427
7TOQ|1|A25S|U|1428
7TOQ|1|A25S|C|1429
*
7TOQ|1|A25S|G|1455
7TOQ|1|A25S|C|1456
7TOQ|1|A25S|G|1457
7TOQ|1|A25S|C|1458
7TOQ|1|A25S|A|1459
7TOQ|1|A25S|C|1460

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain AL18

eL18

Chain AL29

eL29