IL_7TOQ_153

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AA*UUU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOQ_153 not in the Motif Atlas

Geometric match to IL_6DLR_003

Geometric discrepancy: 0.1373

The information below is about IL_6DLR_003

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

58

Unit IDs

7TOQ|1|A25S|A|1737
7TOQ|1|A25S|A|1738
*
7TOQ|1|A25S|U|1790
7TOQ|1|A25S|U|1791
7TOQ|1|A25S|U|1792

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain A5S

5S ribosomal RNA; 5S rRNA

Chain AL05

60S ribosomal protein L5

Chain AL10

Ribosomal protein L10

Chain AL21

60S ribosomal protein L21