IL_7TOQ_179

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAGUGG*CGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOQ_179 not in the Motif Atlas

Geometric match to IL_4RUM_001

Geometric discrepancy: 0.1994

The information below is about IL_4RUM_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

7TOQ|1|A25S|G|2542
7TOQ|1|A25S|A|2543
7TOQ|1|A25S|G|2544
7TOQ|1|A25S|U|2545
7TOQ|1|A25S|G|2546
7TOQ|1|A25S|G|2547
*
7TOQ|1|A25S|C|2772
7TOQ|1|A25S|G|2773
7TOQ|1|A25S|C|2774

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain A58S

5.8S ribosomal RNA; 5.8S rRNA

Chain AL38

eL38