IL_7TOQ_185
3D structure
- PDB id
- 7TOQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGGAAUG*CGAGAGA
- Length
- 14 nucleotides
- Bulged bases
- 7TOQ|1|A25S|U|2661, 7TOQ|1|A25S|A|2674
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOQ_185 not in the Motif Atlas
- Homologous match to IL_8C3A_079
- Geometric discrepancy: 0.1823
- The information below is about IL_8C3A_079
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60192.2
- Basepair signature
- cWW-tSH-tSH-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
7TOQ|1|A25S|U|2656
7TOQ|1|A25S|G|2657
7TOQ|1|A25S|G|2658
7TOQ|1|A25S|A|2659
7TOQ|1|A25S|A|2660
7TOQ|1|A25S|U|2661
7TOQ|1|A25S|G|2662
*
7TOQ|1|A25S|C|2672
7TOQ|1|A25S|G|2673
7TOQ|1|A25S|A|2674
7TOQ|1|A25S|G|2675
7TOQ|1|A25S|A|2676
7TOQ|1|A25S|G|2677
7TOQ|1|A25S|A|2678
Current chains
- Chain A25S
- 28S rRNA
Nearby chains
- Chain AL19
- 60S ribosomal protein L19
- Chain AL27
- 60S ribosomal protein L27
- Chain AL30
- eL30
- Chain AL34
- 60S ribosomal protein L34
- Chain AL43
- 60S ribosomal protein L37a
- Chain AS13
- 40S ribosomal protein S13
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