IL_7TOQ_191

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

7TOQ|1|A25S|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOQ_191 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.1059

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7TOQ|1|A25S|C|2867
7TOQ|1|A25S|G|2868
7TOQ|1|A25S|U|2869
7TOQ|1|A25S|A|2870
7TOQ|1|A25S|A|2871
7TOQ|1|A25S|C|2872
*
7TOQ|1|A25S|G|2877
7TOQ|1|A25S|G|2878
7TOQ|1|A25S|A|2879
7TOQ|1|A25S|U|2880
7TOQ|1|A25S|A|2881
7TOQ|1|A25S|A|2882
7TOQ|1|A25S|G|2883

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain A18S

Small subunit ribosomal RNA; SSU rRNA

Chain AL41

eL41

Chain AL43

60S ribosomal protein L37a