IL_7TOQ_203

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

7TOQ|1|A25S|A|3785, 7TOQ|1|A25S|C|3791, 7TOQ|1|A25S|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOQ_203 not in the Motif Atlas

Geometric match to IL_5TBW_090

Geometric discrepancy: 0.1821

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

7TOQ|1|A25S|C|3781
7TOQ|1|A25S|C|3782
7TOQ|1|A25S|A|3783
7TOQ|1|A25S|A|3784
7TOQ|1|A25S|A|3785
7TOQ|1|A25S|U|3786
7TOQ|1|A25S|G|3787
7TOQ|1|A25S|C|3788
7TOQ|1|A25S|C|3789
7TOQ|1|A25S|U|3790
7TOQ|1|A25S|C|3791
7TOQ|1|A25S|G|3792
*
7TOQ|1|A25S|C|3808
7TOQ|1|A25S|G|3809
7TOQ|1|A25S|C|3810
7TOQ|1|A25S|G|3811

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain A18S

Small subunit ribosomal RNA; SSU rRNA

Chain AL41

eL41