IL_7TOQ_210

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGA*UGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOQ_210 not in the Motif Atlas

Geometric match to IL_7QR8_008

Geometric discrepancy: 0.3853

The information below is about IL_7QR8_008

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

7TOQ|1|A25S|U|3950
7TOQ|1|A25S|G|3951
7TOQ|1|A25S|A|3952
*
7TOQ|1|A25S|U|4060
7TOQ|1|A25S|G|4061
7TOQ|1|A25S|A|4062

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain AS01

40S ribosomal protein S3a