IL_7TOQ_214
3D structure
- PDB id
- 7TOQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGCG*CUC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOQ_214 not in the Motif Atlas
- Geometric match to IL_5TBW_378
- Geometric discrepancy: 0.2673
- The information below is about IL_5TBW_378
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
7TOQ|1|A25S|G|4094
7TOQ|1|A25S|G|4095
7TOQ|1|A25S|C|4096
7TOQ|1|A25S|G|4097
*
7TOQ|1|A25S|C|4112
7TOQ|1|A25S|U|4113
7TOQ|1|A25S|C|4114
Current chains
- Chain A25S
- 28S rRNA
Nearby chains
- Chain AL02
- uL2
- Chain AL08
- eL8
- Chain AL34
- 60S ribosomal protein L34
- Chain AS01
- 40S ribosomal protein S3a
Coloring options: