IL_7TOQ_216

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAG*CGUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOQ_216 not in the Motif Atlas

Homologous match to IL_8C3A_108

Geometric discrepancy: 0.2098

The information below is about IL_8C3A_108

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71241.2

Basepair signature

cWW-cWW-tSH-cWW-L-L

Number of instances in this motif group

7

Unit IDs

7TOQ|1|A25S|C|4243
7TOQ|1|A25S|A|4244
7TOQ|1|A25S|G|4245
*
7TOQ|1|A25S|C|4263
7TOQ|1|A25S|G|4264
7TOQ|1|A25S|U|4265
7TOQ|1|A25S|G|4266
7TOQ|1|A25S|G|4267

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain A5S

5S ribosomal RNA; 5S rRNA

Chain AL05

60S ribosomal protein L5

Chain AL11

60S ribosomal protein L11

Chain AL21

60S ribosomal protein L21