IL_7TOQ_276
3D structure
- PDB id
- 7TOQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAAU*ACAUGUG
- Length
- 12 nucleotides
- Bulged bases
- 7TOQ|1|A25S|G|119, 7TOQ|1|A25S|U|150
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOQ_276 not in the Motif Atlas
- Homologous match to IL_8GLP_287
- Geometric discrepancy: 0.1081
- The information below is about IL_8GLP_287
- Detailed Annotation
- Kink-turn with embedded cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_65996.1
- Basepair signature
- cWW-L-cWW-L-tSH-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
7TOQ|1|A25S|C|118
7TOQ|1|A25S|G|119
7TOQ|1|A25S|A|120
7TOQ|1|A25S|A|121
7TOQ|1|A25S|U|122
*
7TOQ|1|A25S|A|147
7TOQ|1|A25S|C|148
7TOQ|1|A25S|A|149
7TOQ|1|A25S|U|150
7TOQ|1|A25S|G|151
7TOQ|1|A25S|U|152
7TOQ|1|A25S|G|153
Current chains
- Chain A25S
- 28S rRNA
Nearby chains
- Chain A58S
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AL08
- eL8
- Chain AL15
- 60S ribosomal protein L15
- Chain AL35
- 60S ribosomal protein L35
Coloring options: