IL_7TOQ_281

3D structure

PDB id

7TOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

7TOQ|1|A25S|G|748, 7TOQ|1|A25S|U|914, 7TOQ|1|A25S|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOQ_281 not in the Motif Atlas

Geometric match to IL_8C3A_022

Geometric discrepancy: 0.2772

The information below is about IL_8C3A_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7TOQ|1|A25S|G|745
7TOQ|1|A25S|A|746
7TOQ|1|A25S|A|747
7TOQ|1|A25S|G|748
7TOQ|1|A25S|G|749
7TOQ|1|A25S|U|750
7TOQ|1|A25S|G|751
7TOQ|1|A25S|G|752
*
7TOQ|1|A25S|U|911
7TOQ|1|A25S|G|912
7TOQ|1|A25S|U|913
7TOQ|1|A25S|U|914
7TOQ|1|A25S|A|915
7TOQ|1|A25S|C|916
7TOQ|1|A25S|A|917
7TOQ|1|A25S|G|918
7TOQ|1|A25S|C|919

Current chains

Chain A25S

28S rRNA

Nearby chains

Chain AL14

60S ribosomal protein L14

Chain AL20

eL20