IL_7TOR_032

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

7TOR|1|A18S|A|628, 7TOR|1|A18S|U|630

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOR_032 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1359

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7TOR|1|A18S|G|611
7TOR|1|A18S|U|612
7TOR|1|A18S|G|613
7TOR|1|A18S|C|614
7TOR|1|A18S|C|615
7TOR|1|A18S|A|616
7TOR|1|A18S|G|617
*
7TOR|1|A18S|C|624
7TOR|1|A18S|G|625
7TOR|1|A18S|G|626
7TOR|1|A18S|U|627
7TOR|1|A18S|A|628
7TOR|1|A18S|A|629
7TOR|1|A18S|U|630
7TOR|1|A18S|U|631
7TOR|1|A18S|C|632

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS03

40S ribosomal protein S3

Chain AS23

40S ribosomal protein S23

Chain AS30

40S ribosomal protein S30

Chain MRNA

mRNA