IL_7TOR_037

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAGC*GUCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOR_037 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.3205

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7TOR|1|A18S|G|692
7TOR|1|A18S|A|693
7TOR|1|A18S|G|694
7TOR|1|A18S|C|695
*
7TOR|1|A18S|G|731
7TOR|1|A18S|U|732
7TOR|1|A18S|C|733
7TOR|1|A18S|C|734

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS07

eS7

Chain AS22

40S ribosomal protein S15a