3D structure

PDB id
7TOR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
CGGGG*CAAG
Length
9 nucleotides
Bulged bases
7TOR|1|A18S|G|933
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7TOR_048 not in the Motif Atlas
Geometric match to IL_4V88_431
Geometric discrepancy: 0.108
The information below is about IL_4V88_431
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_67085.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
55

Unit IDs

7TOR|1|A18S|C|931
7TOR|1|A18S|G|932
7TOR|1|A18S|G|933
7TOR|1|A18S|G|934
7TOR|1|A18S|G|935
*
7TOR|1|A18S|C|1007
7TOR|1|A18S|A|1008
7TOR|1|A18S|A|1009
7TOR|1|A18S|G|1010

Current chains

Chain A18S
18S rRNA

Nearby chains

Chain AL30
60S ribosomal protein L30
Chain AS01
40S ribosomal protein S3a
Chain AS13
40S ribosomal protein S13
Chain AS26
eS26

Coloring options:


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