3D structure

PDB id
7TOR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
GCUAG*CUUGGACC
Length
13 nucleotides
Bulged bases
7TOR|1|A18S|G|970
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7TOR_050 not in the Motif Atlas
Geometric match to IL_7A0S_004
Geometric discrepancy: 0.2818
The information below is about IL_7A0S_004
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_94910.1
Basepair signature
cWW-tSS-tSH-L-R-R-L-cWW-L
Number of instances in this motif group
3

Unit IDs

7TOR|1|A18S|G|952
7TOR|1|A18S|C|953
7TOR|1|A18S|U|954
7TOR|1|A18S|A|955
7TOR|1|A18S|G|956
*
7TOR|1|A18S|C|967
7TOR|1|A18S|U|968
7TOR|1|A18S|U|969
7TOR|1|A18S|G|970
7TOR|1|A18S|G|971
7TOR|1|A18S|A|972
7TOR|1|A18S|C|973
7TOR|1|A18S|C|974

Current chains

Chain A18S
18S rRNA

Nearby chains

Chain A28S
Large subunit ribosomal RNA; LSU rRNA
Chain AS01
40S ribosomal protein S3a
Chain AS14
uS11

Coloring options:


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