IL_7TOR_052

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOR_052 not in the Motif Atlas

Geometric match to IL_4V88_436

Geometric discrepancy: 0.1101

The information below is about IL_4V88_436

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

7TOR|1|A18S|C|1047
7TOR|1|A18S|G|1048
7TOR|1|A18S|A|1049
7TOR|1|A18S|A|1050
7TOR|1|A18S|G|1051
*
7TOR|1|A18S|C|1067
7TOR|1|A18S|G|1068
7TOR|1|A18S|U|1069
7TOR|1|A18S|A|1070
7TOR|1|A18S|G|1071

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain A28S

Large subunit ribosomal RNA; LSU rRNA

Chain AL02

60S ribosomal protein L8

Chain AS14

uS11

Chain AS26

eS26