3D structure

PDB id
7TOR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
ACCA*UCCCU
Length
9 nucleotides
Bulged bases
7TOR|1|A18S|C|1215, 7TOR|1|A18S|C|1216
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7TOR_060 not in the Motif Atlas
Geometric match to IL_4V88_443
Geometric discrepancy: 0.2197
The information below is about IL_4V88_443
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_63596.9
Basepair signature
cWW-cWS-cHS-L-cWW-tWH
Number of instances in this motif group
15

Unit IDs

7TOR|1|A18S|A|1214
7TOR|1|A18S|C|1215
7TOR|1|A18S|C|1216
7TOR|1|A18S|A|1217
*
7TOR|1|A18S|U|1681
7TOR|1|A18S|C|1682
7TOR|1|A18S|C|1683
7TOR|1|A18S|C|1684
7TOR|1|A18S|U|1685

Current chains

Chain A18S
18S rRNA

Nearby chains

Chain AS05
Ribosomal protein S5
Chain AS16
uS9
Chain AS28
40S ribosomal protein S28
Chain ETRN
Transfer RNA; tRNA
Chain PTRN
Transfer RNA; tRNA

Coloring options:


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