IL_7TOR_097
3D structure
- PDB id
- 7TOR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUGAAUUU*AUUAGUCAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOR_097 not in the Motif Atlas
- Geometric match to IL_4WF9_008
- Geometric discrepancy: 0.1637
- The information below is about IL_4WF9_008
- Detailed Annotation
- 9x8 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_84694.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
7TOR|1|A28S|C|30
7TOR|1|A28S|U|31
7TOR|1|A28S|G|32
7TOR|1|A28S|A|33
7TOR|1|A28S|A|34
7TOR|1|A28S|U|35
7TOR|1|A28S|U|36
7TOR|1|A28S|U|37
*
7TOR|1|A28S|A|44
7TOR|1|A28S|U|45
7TOR|1|A28S|U|46
7TOR|1|A28S|A|47
7TOR|1|A28S|G|48
7TOR|1|A28S|U|49
7TOR|1|A28S|C|50
7TOR|1|A28S|A|51
7TOR|1|A28S|G|52
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain AL13
- 60S ribosomal protein L13
- Chain AL15
- 60S ribosomal protein L15
- Chain AL28
- 60S ribosomal protein L27a
- Chain AL37
- 60S ribosomal protein L37
- Chain AL42
- eL42
Coloring options: