IL_7TOR_142
3D structure
- PDB id
- 7TOR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 7TOR|1|A28S|A|1650, 7TOR|1|A28S|G|1654
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOR_142 not in the Motif Atlas
- Geometric match to IL_5TBW_028
- Geometric discrepancy: 0.134
- The information below is about IL_5TBW_028
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
7TOR|1|A28S|G|1522
7TOR|1|A28S|A|1523
7TOR|1|A28S|A|1524
7TOR|1|A28S|A|1525
7TOR|1|A28S|G|1526
*
7TOR|1|A28S|C|1648
7TOR|1|A28S|U|1649
7TOR|1|A28S|A|1650
7TOR|1|A28S|G|1651
7TOR|1|A28S|U|1652
7TOR|1|A28S|A|1653
7TOR|1|A28S|G|1654
7TOR|1|A28S|C|1655
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain AL04
- 60S ribosomal protein L4
- Chain AL13
- 60S ribosomal protein L13
- Chain AL15
- 60S ribosomal protein L15
- Chain AL28
- 60S ribosomal protein L27a
- Chain AL37
- 60S ribosomal protein L37
Coloring options: